Publications In Press
2008 — 2007 — 2006 — 2005 — 2004 — 2003
Publications In Press
Recent Posters
Chen, Y., Blackwell, T.W., Chen, J., Gao, J., Lee, A.W. and States, D.J. (2007) Integration of Genome and Chromatin Structure with Gene Expression Profiles to Predict c-MYC Recognition Site Binding and Function. PLoS Computational Biology In press.
Chuang, HY, Lee, E, Liu, YT, Lee, D, and Ideker, T. Network-based classification of breast cancer metastasis. Mol Syst Biol. (in press).
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maerel S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T*, and Bader GB. (Ideker is corresponding author). Integration of Biological Networks and Gene Expression Data using Cytoscape Nature Protocols (in press).
Finley, JR., R.L. A guide to yeast two-hybrid experiments, Molecular Cell, Methods Guide Supplement, in press.
Jafari-Khouzani, K., Soltanian-Zadeh, H., Fotouhi, F., Parrish, J.R., and Finley, Jr., R.L. Automated segmentation and classification of high throughput yeast assay spots. IEEE Transactions on Medical Imaging In press.
Kim, B., Nesvizhskii, A. I., Reedy, P. G., Hahn, S., Aebersold, R., J. A. Ranish, The transcription elongation factor TFIIS is a component of RNA polymerase II preinitiation complexes, Proc. Nat. Acad. Sciences U.S.A., in press.
Mueller, D., Bach, C., Zeisig, D., Garcia-Cuellar, M., Monroe, S., Sreekumar, A., Zhou, R., Nesvizhskii, A., Chinnaiyan, A., Hess, J. L., and R.K. Slany, A role for the MLL fusion partner ENL in transcriptional elongation and chromatin modification, Blood, in press
Nesvizhskii, A. I., Vitek, O., Aebersold, R. Analysis and validation of proteomic data generated by tandem mass spectrometry, Nature Methods, in press.
Ostrom, PH, Gandhi, H, Strahler, JR, Walker, AK, Andrews, PC, Leykam, J, Stafford, TW, Kelly, RK, Walker, DN, Buckley, M and Humpula,J.: Unraveling the sequence and structure of the protein osteocalcin from a 42 ka fossil horse. Geochimica et Cosmochimica Acta. (in press).
Ulintz, P. J., Bodenmiller, B., Aebersold, R., Andrews, P. C.and A.I. Nesvizhskii, Investigating MS2-MS3 matching statistics: A model for coupling consecutive stage mass spectrometry data for increased peptide identification confidence, Mol. Cell. Proteomics, in press.
Walker, A.K., Rymar, G., and Andrews, P.C. (2004) Virtual 2-D Gel Electrophoresis by MALDI Mass Spectrometry, The Proteomics Handbook (Walker, J.M., ed.), Humana, Totowa, NJ, in press.